GitHub - d3b-center/d3b_bic-seq2: CWL Implementation based on this tool http://compbio.med.harvard.edu/BIC-seq/ and this cluster implementation : https://github.com/ding-lab/BICSEQ2
![Evaluation of tools for identifying large copy number variations from ultra-low-coverage whole-genome sequencing data | BMC Genomics | Full Text Evaluation of tools for identifying large copy number variations from ultra-low-coverage whole-genome sequencing data | BMC Genomics | Full Text](https://media.springernature.com/lw685/springer-static/image/art%3A10.1186%2Fs12864-021-07686-z/MediaObjects/12864_2021_7686_Fig1_HTML.png)
Evaluation of tools for identifying large copy number variations from ultra-low-coverage whole-genome sequencing data | BMC Genomics | Full Text
Evaluation of tools for identifying large copy number variations from ultra-low-coverage whole-genome sequencing data
![Frontiers | A Cluster-Based Approach for the Discovery of Copy Number Variations From Next-Generation Sequencing Data Frontiers | A Cluster-Based Approach for the Discovery of Copy Number Variations From Next-Generation Sequencing Data](https://www.frontiersin.org/files/Articles/699510/fgene-12-699510-HTML-r1/image_m/fgene-12-699510-g005.jpg)
Frontiers | A Cluster-Based Approach for the Discovery of Copy Number Variations From Next-Generation Sequencing Data
![Frontiers | A Cluster-Based Approach for the Discovery of Copy Number Variations From Next-Generation Sequencing Data Frontiers | A Cluster-Based Approach for the Discovery of Copy Number Variations From Next-Generation Sequencing Data](https://www.frontiersin.org/files/Articles/699510/fgene-12-699510-HTML-r1/image_m/fgene-12-699510-g004.jpg)
Frontiers | A Cluster-Based Approach for the Discovery of Copy Number Variations From Next-Generation Sequencing Data
![WisecondorX: improved copy number detection for routine shallow whole-genome sequencing. - Abstract - Europe PMC WisecondorX: improved copy number detection for routine shallow whole-genome sequencing. - Abstract - Europe PMC](https://europepmc.org/articles/PMC6393301/bin/gky1263fig1.jpg)
WisecondorX: improved copy number detection for routine shallow whole-genome sequencing. - Abstract - Europe PMC
![PDF] Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants | Semantic Scholar PDF] Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants | Semantic Scholar](https://d3i71xaburhd42.cloudfront.net/aa261b192f8eef42d0724a397ee0515e738b588d/7-Figure4-1.png)
PDF] Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants | Semantic Scholar
![Analytical Validation of Clinical Whole-Genome and Transcriptome Sequencing of Patient-Derived Tumors for Reporting Targetable Variants in Cancer - ScienceDirect Analytical Validation of Clinical Whole-Genome and Transcriptome Sequencing of Patient-Derived Tumors for Reporting Targetable Variants in Cancer - ScienceDirect](https://ars.els-cdn.com/content/image/1-s2.0-S1525157817306219-gr5.jpg)
Analytical Validation of Clinical Whole-Genome and Transcriptome Sequencing of Patient-Derived Tumors for Reporting Targetable Variants in Cancer - ScienceDirect
![PDF] Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants | Semantic Scholar PDF] Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants | Semantic Scholar](https://d3i71xaburhd42.cloudfront.net/aa261b192f8eef42d0724a397ee0515e738b588d/6-Figure3-1.png)
PDF] Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants | Semantic Scholar
![WisecondorX: improved copy number detection for routine shallow whole-genome sequencing. - Abstract - Europe PMC WisecondorX: improved copy number detection for routine shallow whole-genome sequencing. - Abstract - Europe PMC](https://europepmc.org/articles/PMC6393301/bin/gky1263fig4.jpg)
WisecondorX: improved copy number detection for routine shallow whole-genome sequencing. - Abstract - Europe PMC
![Frontiers | A Cluster-Based Approach for the Discovery of Copy Number Variations From Next-Generation Sequencing Data Frontiers | A Cluster-Based Approach for the Discovery of Copy Number Variations From Next-Generation Sequencing Data](https://www.frontiersin.org/files/Articles/699510/fgene-12-699510-HTML-r1/image_m/fgene-12-699510-g003.jpg)
Frontiers | A Cluster-Based Approach for the Discovery of Copy Number Variations From Next-Generation Sequencing Data
![True CNVs in a simulated genome and detected by BIC-seq2. a Forty CNVs... | Download Scientific Diagram True CNVs in a simulated genome and detected by BIC-seq2. a Forty CNVs... | Download Scientific Diagram](https://www.researchgate.net/publication/315062499/figure/fig4/AS:962449238925313@1606477188214/True-CNVs-in-a-simulated-genome-and-detected-by-BIC-seq2-a-Forty-CNVs-were-introduced-in.gif)
True CNVs in a simulated genome and detected by BIC-seq2. a Forty CNVs... | Download Scientific Diagram
![Frontiers | Detection of copy number variations based on a local distance using next-generation sequencing data Frontiers | Detection of copy number variations based on a local distance using next-generation sequencing data](https://www.frontiersin.org/files/Articles/1147761/fgene-14-1147761-HTML-r1/image_m/fgene-14-1147761-g005.jpg)
Frontiers | Detection of copy number variations based on a local distance using next-generation sequencing data
![Bioinformatics Applications Note Genome Analysis Control-free Calling of Copy Number Alterations in Deep-sequencing Data Using Gc-content Normalization | Semantic Scholar Bioinformatics Applications Note Genome Analysis Control-free Calling of Copy Number Alterations in Deep-sequencing Data Using Gc-content Normalization | Semantic Scholar](https://d3i71xaburhd42.cloudfront.net/5b99159dcb6ff6bf96a1cff7cccaee0836a28b28/2-Figure1-1.png)
Bioinformatics Applications Note Genome Analysis Control-free Calling of Copy Number Alterations in Deep-sequencing Data Using Gc-content Normalization | Semantic Scholar
![Evaluation of tools for identifying large copy number variations from ultra-low-coverage whole-genome sequencing data | BMC Genomics | Full Text Evaluation of tools for identifying large copy number variations from ultra-low-coverage whole-genome sequencing data | BMC Genomics | Full Text](https://media.springernature.com/lw685/springer-static/image/art%3A10.1186%2Fs12864-021-07686-z/MediaObjects/12864_2021_7686_Fig4_HTML.png)
Evaluation of tools for identifying large copy number variations from ultra-low-coverage whole-genome sequencing data | BMC Genomics | Full Text
![Frontiers | A Cluster-Based Approach for the Discovery of Copy Number Variations From Next-Generation Sequencing Data Frontiers | A Cluster-Based Approach for the Discovery of Copy Number Variations From Next-Generation Sequencing Data](https://www.frontiersin.org/files/Articles/699510/fgene-12-699510-HTML-r1/image_m/fgene-12-699510-t002.jpg)
Frontiers | A Cluster-Based Approach for the Discovery of Copy Number Variations From Next-Generation Sequencing Data
![PDF) Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants PDF) Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants](https://www.researchgate.net/publication/303797220/figure/fig5/AS:369299651874818@1465059306266/Performance-of-BIC-seq2-CNVnator-FREEC-and-ReadDepth-for-simulated-data_Q320.jpg)
PDF) Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants
![CNVnator result filtering issue - comparison with the result from other tools · Issue #134 · abyzovlab/CNVnator · GitHub CNVnator result filtering issue - comparison with the result from other tools · Issue #134 · abyzovlab/CNVnator · GitHub](https://user-images.githubusercontent.com/42195952/49417442-15b91500-f7c1-11e8-9879-14aa52a1fb6e.png)
CNVnator result filtering issue - comparison with the result from other tools · Issue #134 · abyzovlab/CNVnator · GitHub
![Frontiers | A Cluster-Based Approach for the Discovery of Copy Number Variations From Next-Generation Sequencing Data Frontiers | A Cluster-Based Approach for the Discovery of Copy Number Variations From Next-Generation Sequencing Data](https://www.frontiersin.org/files/Articles/699510/fgene-12-699510-HTML-r1/image_m/fgene-12-699510-t001.jpg)
Frontiers | A Cluster-Based Approach for the Discovery of Copy Number Variations From Next-Generation Sequencing Data
![PDF] WisecondorX: improved copy number detection for routine shallow whole-genome sequencing | Semantic Scholar PDF] WisecondorX: improved copy number detection for routine shallow whole-genome sequencing | Semantic Scholar](https://d3i71xaburhd42.cloudfront.net/7ba883a32a465c6790a2ac06aed46b658db5d38f/6-Figure3-1.png)
PDF] WisecondorX: improved copy number detection for routine shallow whole-genome sequencing | Semantic Scholar
![Frontiers | A shortest path-based approach for copy number variation detection from next-generation sequencing data Frontiers | A shortest path-based approach for copy number variation detection from next-generation sequencing data](https://www.frontiersin.org/files/Articles/1084974/fgene-13-1084974-HTML-r3/image_m/fgene-13-1084974-g005.jpg)